BP_TREE2PAG(1)

💅 bp_tree2pag — the Bio::TreeIO → Pagel converter, no cap 💅

okay so bestie, this is the manual page for BP_TREE2PAG(1) — from the User Contributed Perl Documentation crew — and it's literally here to help you convert trees. The vibe is very “tree format glow-up,” and the facts are staying exactly where they are. 🎀

✨ NAME ✨

bp_tree2pag — convert Bio::TreeIO parseable format trees to pagel format

🌸 SYNOPSIS 🌸

Here's the exact energy, bestie. No improvising, no “close enough,” fr fr:

bp_tree2pag -if nexus -i file.nexus > file.pag

# OR pipe in through STDIN, and use newick format instead

cat file.newick | bp_tree2pag -if newick > file.nh

# OR specify an output and input

bp_tree2pag -o file.pag -i file.newick

Like, look at those examples go. The -if flag is out here with nexus and newick, -i is holding a file, and -o is holding an output file. The pipe-through-STDIN moment is also iconic — cat file.newick | bp_tree2pag -if newick > file.nh — and the “specify an output and input” version is bp_tree2pag -o file.pag -i file.newick. Periodt. 💅

🦋 DESCRIPTION 🦋

Convert TreeIO parseable files into Pagel format tree files. That's the main character move.

But bestie, be warned: pagel format only really supports a single tree per file so. That's the caveat, and we are not pretending otherwise. 🫶

Also, Pagel parsing is not yet available in bioperl. Not me delivering the lore, but there it is. 😭

mwah 💋✨ this little page is sourced from User Contributed Perl Documentation, version perl v5.42.3, dated 2021-02-03, and the manual name is BP_TREE2PAG(1) — slay, bye bestie 🎀🦋