BP_SPLIT_SEQ(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

💖 BP_SPLIT_SEQ(1) — a lil perl script bestie 💖

okay so real talk, this is the manual page for bp_split_seq, a user contributed perl thingy that splits a sequence into equal sized chunks, with an optional overlapping range if you're feeling spicy 🌶️. yes bestie, that's literally the whole vibe check.

✨ SYNOPSIS ✨

bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

that's it. that's the whole incantation 🪄 run it and the script does its little thing.

🌸 DESCRIPTION 🌸

The script will split sequences into chunks

yep! that's the whole assignment, and it ate 💅. below are the flags you actually need, and then the special lil extras 👑

🎀 Mandatory Options 🎀

these aren't optional, bestie, they're the main character energy of the whole command ✨

  • -c — the desired length of the resulting sequences. how big do you want your chunks, queen? 👑
  • -f — the input file, and it must be FASTA format. no cap, FASTA only 🧬

🦋 Special Options 🦋

these are the extra sprinkles on top 🍓

  • -o — the overlapping range between the resulting sequences. overlap era 💞
  • -i — create an index file with the resulting sequence files. this is lowkey iconic because it's useful if you want to pass this list as input arguments into another programs (i.e. CLUSTAL, HMMER, etc.) 🔥

💌 FEEDBACK 💌

🫶 Mailing Lists 🫶

user feedback is an integral part of the evolution of this and other Bioperl modules. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated, fr fr 🌈

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs 🐛

report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution 🙈. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues
ngl, if something's broken, tell them! that's how it gets fixed 💀➡️💖

👑 AUTHORS 👑

the legends behind this:

Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at intelligenomes.comE<gt>
(some enhancements)

shoutout to Mauricio for the (some enhancements) — we see you and we appreciate you 🫶

and that's the page bestie! this one's running on perl v5.42.3 and the date on it is 2021-02-03 — vintage but still slaying 💅✨

📦 where this page comes from