BP_MUTATE(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

💅 BP_MUTATE(1) — User Contributed Perl Documentation, but make it cute 💅

okay bestie, welcome to BP_MUTATE(1) — yes, the User Contributed Perl Documentation page for your fave lil' sequence mutagenizer. Buckle up, it's giving science but make it group chat 💖

🌸 NAME 🌸

bp_mutate.pl — randomly mutagenize a single protein or DNA sequence. That's the whole serve, no cap 🧬✨

✨ SYNOPSIS ✨

okay so you run it like this, literally:

./bp_mutate.pl -p 25 -i test.fa -n 5 -f swiss -o muts.swiss

#or

./bp_mutate.pl --percent=25 --input=test.fa --number=5 -output=x.fa

periodt. copy those exactly, bestie, especially that second one — yes, it really says -output=x.fa with one dash, iykyk 👀

💅 DESCRIPTION 💅

This script randomly mutagenizes a single protein or DNA sequence — one or more times, fr fr. You specify the percentage mutated and the number of resulting mutant sequences, and then it prints the mutagenized sequences to STDOUT or writes them to an output file. iconic behavior, honestly 🎀

Here's the option menu, bestie — every single one, no skips:

  • -h, --help — Help. The classic "wait, what do I do again?" button 💅
  • -p, --percent — Percent mutagenized 🔥
  • -n, --number — Number of mutant sequences created 🌈
  • -o, --output — Output file (optional) 🎀
  • -f, --format — Output format (default: fasta) ✨
  • -i, --input — Input file 🧬

🫶 FEEDBACK 🫶

User feedback is an integral part of the evolution of this and other Bioperl scripts — so yes, your comments are main character energy. Send your comments and suggestions to the Bioperl mailing list. Your participation is much appreciated, bestie 💖

🐛 Reporting Bugs 🐛

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

ngl, the bug tracker is lowkey doing the lord's work 🫡

👑 AUTHOR 👑

This page was authored by Brian Osborne — bosborne at alum.mit.edu. slay 🦋

mwah 💋 — this page came from perl v5.42.3, dated 2021-02-03, and yes it's BP_MUTATE(1), periodt.

📦 where this page comes from