BP_MRTRANS(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

🌸 NAME 🌸

okay so this is BP_MRTRANS(1), straight outta the User Contributed Perl Documentation corner of the universe 💅. It's the manual for bp_mrtrans — implement a transformer of alignments from protein to mrna coordinates. That's the whole assignment, bestie ✨.

✨ SYNOPSIS ✨

the usage vibe is exactly this, no cap:

Usage:
  bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database]  [-sf cDNA sequence format] [-h]

🎀 DESCRIPTION 🎀

This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans. (iconic lineage tbh 🧬)

The options are:

  • -o filename — the output filename [default STDOUT]
  • -of format — output sequence format (multiple sequence alignment) [default phylip]
  • -i filename — the input filename [required]
  • -if format — input sequence format (multiple sequence alignment) [ default clustalw]
  • -s, --seqdb filename — the cDNA sequence database file
  • -sf, --seqformat — the cDNA seq db format (flatfile sequence format)
  • -h — this help menu

👑 AUTHOR 👑

Jason Stajich, jason-at-bioperl-dot-org — the author, periodt.

mwah 💋 — this page is running on perl v5.42.3, dated 2021-02-03. bye bestie 🫶

📦 where this page comes from