BP_BIOGETSEQ(1)

🎀 NAME 🎀

bp_biogetseq — sequence retrieval using OBDA registry. Hiii bestie, welcome to the BP_BIOGETSEQ(1) page from the User Contributed Perl Documentation crew 💖 This is the little script that does the sequence fetching, and yes it’s giving main character energy.

✨ DESCRIPTION ✨

Okay so this script retrieves sequences from the source defined by users registry setup. The current alternatives are from a local indexed file, sql database or over the web. That’s the whole menu, bestie: local indexed file, sql database, or over the web 🌈

🦋 USAGE 🦋

  Usage: bp_biogetseq --dbname embl --format embl
                   --namespace acc id [ ids... ]

• dbname defaults to embl — cute little default, no cap 💅
• format defaults to embl
• namespace defaults to 'acc' ['id', 'acc', 'version']
• unnamed arguments are ids in the given namespace

made with 💖 under perl v5.42.3, dated 2021-02-03 — bye bestie, go get those sequences! 🫶✨