BP_AACOMP(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

🌸 NAME 🌸

okay bestie, meet bp_aacomp — it's all about amino acid composition of protein sequences. You'll find this whole thing filed under BP_AACOMP(1) in the User Contributed Perl Documentation section. 💅

✨ SYNOPSIS ✨

bp_aacomp [-f/--format FORMAT] [-h/--help] filename
or
bp_aacomp [-f/--format FORMAT] < filename
or
bp_aacomp [-f/--format FORMAT] -i filename

🧬 DESCRIPTION 🧬

This script prints out the count of amino acids over all protein sequences from the input file. That's the whole glow-up. ✨

🎀 OPTIONS 🎀

The default sequence format is fasta. periodt.

The synopsis puts these flags on the table:

  • -f, --format _FORMAT_ — the format flag from the synopsis.
  • -h, --help — the help flag from the synopsis.

You can provide the sequence input using any of the three methods:

  • unnamed argument — bp_aacomp filename
  • named argument — bp_aacomp -i filename
  • standard input — bp_aacomp < filename

💌 FEEDBACK 💌

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. 🫶

💌 Mailing Lists 💌

🐛 Reporting Bugs 🐛

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR - Jason Stajich 👑

Email jason@bioperl.org. 💌

📜 HISTORY 📜

Based on aacomp.c from an old version of EMBOSS. iconic lineage behavior 🌈

✨ cute sign-off: this page is from perl v5.42.3, dated 2021-02-03. mwah 💋✨

📦 where this page comes from