BAM-READ(1)

💖 NAME 💖

bam-read — she parses bam files after all the multi-mapping reads have been assigned, and then aggregates your read mapping information by contig. That's the whole serve. 🧬✨

(this is bam-read(1), living in the User Commands manual, bestie)

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🌸 SYNOPSIS 🌸

Currently captured:

• name
• bases mapped
• edit distance
• bridges
• length
• reads mapped
• both mapped
• proper pair
• good
• uncovered bases
• mean mapq
• probability of coverage not being segmented

okay so that's the list of what's currently captured. twelve things. count them. she's thorough. 💅

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🎀 DESCRIPTION 🎀

bam-read version 1.0.0 — here's how you run her:

Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>

and a lil example so you can see it in the wild:

example: bam-read in.bam out.csv 0.95

Now, not to be that girl, but the page says it again, so imma say it again too, no cap:

Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>

example: bam-read in.bam out.csv 0.95

fr fr that's exactly what it says. twice. iconic behavior honestly. 🫶

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and that's the whole page bestie, slay 💅✨

signing off: bam-read version 1.0.0, November 2022 🎀🦋