ALL_DISTS(1)

📦 version 1.8, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ NAME ✨

Okay bestie, this is the ALL_DISTS(1) page from the User Commands section 🎀 and it's all about all_dists. It takes a tree in Newick (*.nh) format and reports distances 🦋

💖 DESCRIPTION 💖

okay so you hand all_dists a tree in Newick (*.nh) format and it reports the distances between every pair of leaves 🌈

if you give it multiple files, it gets even better. the distances are computed by averaging across models ✨ and it also reports statistics that describe the errors in those estimates 📊 this is lowkey perfect for bootstrapping, so go peek at phyloBoot --dump-mods 🫶

🧚 USAGE 🧚

all_dists <tree.nh> [<tree2.nh> <tree3.nh>...]

🌸 OPTIONS 🌸

  • --mod, -m — read from tree model (*.mod) file(s) instead of a Newick file 💅
  • --tree, -t <file>|<string> — use the leaf names from the given tree. this one is giving main character energy when your primary files use numbers instead of names 🔥
  • --help, -h — print the help message 🍓

all_dists 1.4 · May 2016 · that's the whole tea, bestie 💜🦋

📦 where this page comes from