alignment-info(1)

💖 alignment-info(1) 💖

okay bestie, this is the manual page for alignment-info, and it's literally about looking at your alignment and getting the stats 📊✨

🌸 NAME 🌸

alignment-info - Show useful statistics about the alignment. 🦋

🧚 SYNOPSIS 🧚

alignment-info alignment-file [tree-file] [OPTIONS]

💅 DESCRIPTION 💅

Okay so this command shows you useful stats about your alignment. Obsessed. 🔥

🎀 ALLOWED OPTIONS: 🎀

• -h, –help — pull up the help message 🙈
• –align arg — point it at the file with your sequences and initial alignment 🧬
• –tree arg — point it at the file with your initial tree 🌳
• –alphabet arg — pick your alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons. Choose wisely, it's giving main character energy 👑
• -e, –erase-empty-columns — yeet any columns that are totally empty (all gaps) 🧹
• -N, –show-names — print the sequence names and then bounce 👋
• -L, –show-lengths — print the sequence lengths and then bounce 📏

🌈 REPORTING BUGS 🌈

If something's being weird, the BAli-Phy online help is at http://www.bali-phy.org/docs.php. 🫶

And for bug reports, slide into the inbox at bali-phy-users@googlegroups.com. 💌

⭐ AUTHORS ⭐

Written by Benjamin Redelings, the real one. 👑

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Okay bestie, that's the whole tea ☕💜 This alignment-info(1) page is from Feb 2018, so go be iconic with those alignments! 🦋✨