alignment-find(1)

🎀 alignment-find(1) 🎀

Okay bestie, this is the manual for alignment-find(1) 💖 and it's honestly so useful. Let me walk you through it ✨

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✨ NAME ✨

alignment-find — the whole vibe is finding the last (or first) FASTA alignment in a file 🧚

💅 SYNOPSIS 💅

alignment-find [OPTIONS] < in-file

🦋 DESCRIPTION 🦋

Okay so this one is giving search energy 🔍 It goes through a file and finds the last (or first) FASTA alignment in there. Iconic, no notes 💜

👑 ALLOWED OPTIONS 👑

• -h, –help — pulls up the help message 🫶
• –alphabet arg — you get to pick the alphabet here 🌈 Your choices are DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop. Choose your fighter bestie 💅
• –first — grabs the first alignment in the file 🌸
• –last — grabs the last alignment in the file 🍓 This one's the default, so if you don't pick anything, you're getting this one ✨

🐛 REPORTING BUGS 🐛

Lowkey, if you need more help, the BAli-Phy online help lives at http://www.bali-phy.org/docs.php 📚

And if something's broken, send your bug reports to bali-phy-users@googlegroups.com 💌 The bali-phy crew wants to hear from you, no cap 🫶

🌟 AUTHORS 🌟

Benjamin Redelings. The queen who made this happen 👑

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That's the whole page, bestie: alignment-find(1), last updated Feb 2018 🦋💖 Now go find those alignments and slay ✨💅