alignment-chop-internal(1)

Okay bestie, let's get into alignment-chop-internal(1) 🦋 This page is giving main character energy and I'm obsessed. The whole tool has one job, so let's go.

NAME ✨

alignment-chop-internal - the tool that removes ancestral sequences from an alignment 💅

SYNOPSIS 🎀

alignment-chop-internal [OPTIONS] < alignments-file

DESCRIPTION 🌸

So the vibe here is simple: it removes ancestral sequences from an alignment. No cap, that's literally the whole job 💀

ALLOWED OPTIONS: 💖

• -h, –help — pulls up the help message, iykyk 🙈
• –align arg — a file with the sequences and an initial alignment 🫶
• –alphabet arg — set this to Codons' if you want codon alphabets to be preferred 🧚
• –tree arg — a file with a tree that specifies which leaves to keep 🌈
• -N arg, –nleaves arg — how many sequences to keep ✨

REPORTING BUGS 🐞

BAli-Phy online help lives at http://www.bali-phy.org/docs.php, so check there first 📚

If something's broken, send your bug reports to bali-phy-users@googlegroups.com 📬

AUTHORS 👑

Benjamin Redelings. The queen who made this 👸

---

That's the tea ☕ This page is from alignment-chop-internal(1), dated Feb 2018. Stay iconic, bestie 🫶💜