ALI2GFF(1)

ALI2GFF(1) from the General Commands Manual is here, bestie 🦋 Let's get into it!

✨ NAME ✨

okay so ali2gff is a module that literally converts MUMmer output files into gff formatted output 🧚

🎀 SYNOPSIS 🎀

Here's the vibe for calling it 💅

ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h]
<MUMmer_output_file>

💖 OPTIONS 💖

• -h, --help — pulls up a quick summary of all the options 🌸
• -r — flips the sequences around, so sequence 1 goes on the y-axis and sequence 2 goes on the x-axis 🔄
• -t <.|0|1|2> — slaps the label frame into the gff output 🦋
• -x <name> — names the species for species1, with the default being "Seq1" 🧚
• -y <name> — names the species for species2, with the default being "Seq2" 🫶
• -i — ignores the full sequence identities, no thoughts, head empty 🙈
• -f — writes the output to a file 💜

✨ SEE ALSO ✨

Check these out too, they're giving everything 👑

blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1).

🎀 AUTHOR 🎀

ali2gff was written by Steffi Gebauer-Jung, the real one 👑

This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others) 🌈

Last but not least 💅 this page was last updated on Mon, 21 Mar 2005 21:44:15 -0300, and it's still ALI2GFF(1) forever 🫶✨