R_MDS(1)

📦 version 1.1.4, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

🎀 R_MDS(1) 🎀

Okay bestie, welcome to the manual for R_mds, a User Commands tool you run straight from your terminal 💅

✨ NAME ✨

R_mds is the tool that projects a distance matrix into a lower number of dimensions 🦋

✨ SYNOPSIS ✨

R_mds -k <filtered_kmers.txt> -p <pheno_file>

✨ DESCRIPTION ✨

Okay so R_mds is giving dimensionality-reduction energy 🌈 It takes your distance matrix and projects it into a lower number of dimensions. Lowkey important: you need R and rhdf5 installed first, and the github wiki has more details, so go check it 🤓

✨ OPTIONS ✨

💖 Required

  • -d, --dist — the distance matrix that kmds spits out 🍓
  • -p, --pheno — the phenotype file that seer uses 🧚

🌸 Optional

  • -o, --output — your output prefix. If you don't pick one, it defaults to 'all_structure' 🎀
  • --pc — how many dimensions you want to project into. Default is 3 ⭐
  • -R — the R executable. Default is 'which R' 💜
  • -h, --help — pulls up this message 🙈

✨ AUTHOR ✨

This manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program 🫶

Bye bestie 💅 This page is for R_mds 1.1.2, last updated March 2017. It's still iconic 🌈✨💖 R_MDS(1) 🦋

📦 where this page comes from