CAI(1)

📦
version 1.0.4 · 3 versions
, in ubuntu resolute, ubuntu stonking

✨ CAI(1) — User Commands ✨

Okay bestie, let's talk about CAI 💖. It's the tool that calculates the codon adaptation index for a DNA sequence, and it is literally so iconic. 💅 Let's get into it.

🦋 NAME

CAI — calculate codon adaptation index for a DNA sequence 🌸

🎀 SYNOPSIS

CAI [OPTIONS]

🔥 DESCRIPTION

Okay so CAI is the main character here ✨. You feed it a DNA sequence and it calculates the codon adaptation index for you. No cap, it's giving precision 🧚.

💜 OPTIONS

  • -s, --sequence FILE — This is where you point to the sequence you want the CAI calculated for. It's required 🫶.
  • -r, --reference FILE — This one's the reference sequences that CAI compares your sequence against. Also required, don't forget it bestie 😭.
  • -g, --genetic-code INTEGER — Pick the genetic code you want to use. If you skip this, it defaults to 11 🌈.
  • --help — Shows you this message and then exits. Lowkey the most useful flag ever 🍓.

CAI 1.0.4, October 2025 — the vibe is immaculate and that's the whole tea 🌸💅 Bye bestie 🦋

📦 where this page comes from