TFBS::...:Motif(3pm)

💖 TFBS::PatternGen::Gibbs::Motif 💖

okay bestie, you found the TFBS::...:Motif(3pm) page (that's the truncated little nickname the header uses, the real full name is right below, don't worry) 💅 and it's a good one. This is a class for unprocessed motifs and associated numerical scores created by the Gibbs program. Let's get into it ✨

Keep reading, it's short but it's iconic.

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📖 NAME

TFBS::PatternGen::Gibbs::Motif — a whole class dedicated to storing and manipulating the unprocessed motifs and their associated numerical scores that the Gibbs program made. Like, this is literally its entire job and it does it flawlessly 🫶

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👀 SYNOPSIS

yeah so... there's genuinely nothing here. Empty. Void. No synopsis for us today 😭 It's giving "the author said figure it out" and honestly? Respect. Moving on 💀

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🦋 DESCRIPTION

TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated numerical scores created by the Gibbs program. 🎀

But listen — you do not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. Do not be out here constructing these by hand, bestie, that is not the assignment. They are created for you by running TFBS::PatternGen::Gibbs. Let the machine do its thing, you just vibe and collect the results ✨

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📬 FEEDBACK

Please send bug reports and other comments to the author. They want to hear from you fr fr 💌 Found a bug? Tell them. Got thoughts? Tell them. This is a two-way street, be a good citizen 🫶

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👑 AUTHOR - Boris Lenhard and Wynand Alkema

• Boris Lenhard <Boris.Lenhard@cgb.ki.se>
• Wynand Alkema <Wynand.Alkema@cgb.ki.se>

Two legends, one module. We stan 🌸

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📚 APPENDIX

The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore. (_ = don't touch, that's private business, iykyk 🙈)

🗺️ MAP

• Title : MAP
• Usage : my $map_score = $motif->MAP;
• Function: returns MAP score for the detected motif (This is a backward compatibility method. For consistency, you should use $motif->tag('MAP_score') instead
• Returns : float (a scalar)
• Args : none

okay so real talk: MAP is the backward compatibility era method. It still works, it still slays, but if you want consistency you should be using $motif->tag('MAP_score') instead. Do it for you, not for me 💅

It takes no arguments (none, zero, nada) and hands you back a float, which is a scalar. That's it. That's the whole method. Clean. Simple. Ate. 🔥

🌈 Other methods

TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix. 🧬 Yes the family tree is a whole lineage, main character energy all the way down.

Please consult the documentation of those modules for additional available methods. There's more where this came from, bestie, go read up 👑

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and that's the page!! no cap, every option and method is accounted for 💖 This was TFBS::...:Motif(3pm), served up from perl v5.42.3, dated 2026-08-21 — sending you off with love, go build something iconic ⭐🦋🎀