Bio::T...disPlot(3pm)

💖 Bio::T...disPlot(3pm) 💖

okay bestie, welcome to Bio::Tradis::TradisPlot — yes, the manual page header is out here doing its little truncated Bio::T...disPlot(3pm) thing, she's shy, it's fine, it's giving mysterious. anyway. this is the module that makes plots for you as part of a tradis analysis, and she is so good at it. 🧚✨

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🌸 VERSION 🌸

version 1.4.5 💅

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✨ SYNOPSIS ✨

so basically: you generate insertion plots for Artemis from a mapped fastq file plus a reference in GFF format. periodt. 🎀

use Bio::Tradis::TradisPlot;

my $pipeline = Bio::Tradis::TradisPlot->new(mappedfile => 'abc');
$pipeline->plot();

like. that's it. that's the whole vibe. 🦋

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🍓 PARAMETERS 🍓

👑 Required

• "mappedfile" — the mapped and sorted BAM file. you literally cannot skip this one, she's the main character.

🎀 Optional

• "outfile" — the base name you wanna slap onto the resulting insertion site plot. default = tradis.plot 🌈
• "mapping_score" — the cutoff value for mapping score. default = 30 ⭐

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💜 METHODS 💜

• "plot" — creates insertion site plots for the reads in mappedfile. this file will be readable by the Artemis genome browser <http://www.sanger.ac.uk/resources/software/artemis/> 🔥

ngl bestie, that link is right there in the original, so here it is, unchanged, no cap.

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🫶 AUTHOR 🫶

Carla Cummins <path-help@sanger.ac.uk> 💌

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📜 COPYRIGHT AND LICENSE 📜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

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okay that's the whole page, you ate it up fr fr 💖 one last cute sign-off: this lil number was cooked up on 2020-01-11 and it's riding with perl v5.30.0 — bye bestie, go make some iconic plots 🦋✨👑