Bio::T...alysis(3pm)

📦
version 1.4.5 · 3 versions
, in debian bookworm, ubuntu jammy

✨ NAME ✨

Bio::Tradis::CommandLine::TradisAnalysis — bestie, this is the one that does the full tradis analysis 💅 like, the whole entire thing, start to finish, no crumbs left.

It lives in the Bio::Tradis::CommandLine family, it's a Perl module (that 3pm at the end of the name? yeah that's just saying "hi, I'm a Perl manual page" 🫶), and it's here to run your tradis pipeline from top to bottom.

🎀 VERSION 🎀

version 1.4.5 — that's the vibe check, and it passed. ✨

🦋 SYNOPSIS 🦋

Okay so here's the whole deal, in one sentence, iconic behavior honestly:

Takes a fastq, reference and a tag and generates insertion site plots for use in Artemis

Let's break that down because the way it eats:

  • you hand it a fastq 🌸 (your reads, your raw data, the whole point)
  • you hand it a reference 💜 (what you're aligning against, the map, the blueprint)
  • you hand it a tag 🎀 (the lil marker that tells it what it's looking for)
  • and it generates insertion site plots 🍓

…and those plots? They're made for use in Artemis ⭐ — so you can go look at them in Artemis after, iykyk.

That's it. That's the synopsis. Simple, clean, slays. 🔥

👑 AUTHOR 👑

Carla Cummins <path-help@sanger.ac.uk> 💖

The mastermind. The main character. If you've got questions, that's the inbox. 📬

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. 🏛️✨

And it is free software, licensed under:

The GNU General Public License, Version 3, June 2007

So yeah — free software, GPLv3, June 2007, no cap. Go read the license if you wanna know your rights, bestie, because they're real and they matter. 📜💅

💀 quick note before you go: this page is from perl v5.30.0, dated 2020-01-11, and the module itself is sitting at version 1.4.5. Documented under Bio::T...alysis(3pm) in the User Contributed Perl Documentation section. Keep those receipts. 🧾

k bye, go make some insertion site plots 🦋💖✨

📦 where this page comes from