Bio::T...nePlots(3pm)

💖 Bio::T...nePlots(3pm) — like, the whole vibe 💖

okay bestie, so this page lives in the User Contributed Perl Documentation corner of the manual-verse, and it's filed under Bio::T...nePlots(3pm) — yes the title is literally truncated like that, that's not me being cute, that's just how it's printed, iykyk. anyway. sit down, grab a strawberry 🍓, we're combining plotfiles.

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✨ NAME ✨

Bio::Tradis::CombinePlots — combine multiple plotfiles and generate updated statistics for the combined files. it does exactly what it says on the tin, no cap.

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🎀 VERSION 🎀

version 1.4.5 — iconic, current, periodt.

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🦋 SYNOPSIS 🦋

so the way this works: you hand it a tab-delimited file where the first column is an ID, and then every column after that is a list of plotfiles to combine for that row. that's it, that's the whole deal.

the ID does double duty, and this part matters: it names the new plotfile and it's the identifier in the stats file. so bestie, please, make sure your IDs are unique. fr fr. 🙈

like, say you've got an input file named plots_to_combine.txt that looks like this:

tradis1 plot1.1.gz  plot1.2.gz plot1.3.gz
tradis2 plot2.1.gz  plot2.2.gz
tradis3 plot3.1.gz  plot3.2.gz plot3.3.gz   plot3.4.gz

(yes the spacing is chaotic, it's a tab-delimited file, she doesn't care)

and what you get out of it is:

1. a directory named combined with 3 files — tradis1.insertion_site_plot.gz, tradis2.insertion_site_plot.gz, tradis3.insertion_site_plot.gz
2. a stats file named plots_to_combine.stats

slay. 💅 two outputs, zero drama.

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🌸 USAGE 🌸

here's the whole thing in action, copy it exactly, character for character:

use Bio::Tradis::CombinePlots;

my $pipeline = Bio::Tradis::CombinePlots->new(plotfile => 'abc');
$pipeline->combine;

you make the object with your plotfile, you call combine, you go live your life. main character energy honestly. ✨

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👑 AUTHOR 👑

Carla Cummins <path-help@sanger.ac.uk> — the legend herself 🫶

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💜 COPYRIGHT AND LICENSE 💜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

so yeah — free software, GPL v3, June 2007. that's the license, respect it bestie 💀

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and that's the page!! 🌈 sign-off time: this doc is from perl v5.30.0, dated 2020-01-11, and that's the last line of the original, so we're done here. go combine some plots, you absolute icon 💖🦋⭐