Bio::T...:Prints(3pm)

🌸 NAME 🌸

Bio::Tools::Run::Prints — the PRINTS fingerprint identification algorithm, bestie 💅

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✨ SYNOPSIS ✨

okay so first you build a Prints factory, then you feed it a sequence:

Build a Prints factory

my @params = ('DB',$dbfile);
my $factory = Bio::Tools::Run::Prints->new($params);

# Pass the factory a Bio::Seq object
# @feats is an array of Bio::SeqFeature::Generic objects
my @feats = $factory->run($seq);

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💖 DESCRIPTION 💖

FingerPRINTScan II is a PRINTS fingerprint identification algorithm. no cap, that's the whole vibe.

Copyright (C) 1998,1999 Phil Scordis — slay, we love a copyright notice 👑

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🫶 FEEDBACK 🫶

Mailing Lists

fr fr, user feedback is literally an integral part of the evolution of this and other Bioperl modules 🧚 send your comments and suggestions preferably to one of the Bioperl mailing lists. your participation is much appreciated, bestie 🥹

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. many experienced and reponsive experts will be able look at the problem and quickly address it 🫶 please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

report bugs to the Bioperl bug tracking system so we can keep track of the bugs and their resolution 🙈 bug reports can be submitted via the web:

http://redmine.open-bio.org/projects/bioperl/

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👑 AUTHOR - Bala 👑

Email savikalpa@fugu-sg.org

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🎀 APPENDIX 🎀

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ (iykyk 💀)

program_name

• Title: program_name
• Usage: $factory>program_name()
• Function: holds the program name
• Returns: string
• Args: None

program_dir

• Title: program_dir
• Usage: $factory->program_dir(@params)
• Function: returns the program directory, obtained from ENV variable.
• Returns: string
• Args:

new

• Title: new
• Usage: $prints->new(@params)
• Function: creates a new Prints factory
• Returns: Bio::Tools::Run::Prints
• Args:

predict_protein_features

• Title: predict_protein_features()
• Usage: DEPRECATED. Use $obj->run($seqFile) instead.
• Function: Runs Prints and creates an array of featrues
• Returns: An array of Bio::SeqFeature::Generic objects
• Args: A Bio::PrimarySeqI

run

• Title: run
• Usage: $obj->run($seq)
• Function: Runs Prints
• Returns: An array of Bio::SeqFeature::Generic objects
• Args: A Bio::PrimarySeqI, or a Fasta file name

_input

• Title: _input
• Usage: obj->_input($seqFile)
• Function: Internal(not to be used directly)
• Returns:
• Args:

_run

• Title: _run
• Usage: $obj->_run()
• Function: Internal(not to be used directly)
• Returns: An array of Bio::SeqFeature::Generic objects
• Args:

_writeSeqFile

• Title: _writeSeqFile
• Usage: obj->_writeSeqFile($seq)
• Function: Internal(not to be used directly)
• Returns:
• Args:

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and that's the whole page, bestie 💜 this one came to you courtesy of perl v5.36.0, dated 2023-01-22, under the Bio::T...:Prints(3pm) manual name. periodt 💅✨