Bio::S...tigrxml(3pm)

✨ NAME ✨

Bio::SeqIO::tigrxml — bestie, this is the parser for TIGR (new) XML 💖

(also known as Bio::S...tigrxml(3pm), if you're being formal about it 💅)

---

🌸 SYNOPSIS 🌸

okay so here's the whole vibe, no cap:

use Bio::SeqIO;
my $in = Bio::SeqIO->new(-format => 'tigrcoordset',
                        -file   => 'file.xml');

while( my $seq = $in->next_seq ) {
   # do something...
}

like. you make a Bio::SeqIO, you tell it the format is 'tigrcoordset', you point it at your 'file.xml', and then you just keep calling next_seq until there's no more seqs to get. iconic behavior honestly 🦋

---

🎀 DESCRIPTION 🎀

This is a parser for TIGR Coordset XML — specifically for their in-progress annotation dbs. it's giving "i read your weird xml so you don't have to" energy and we love that for us 💜

---

💌 FEEDBACK 💌

🌈 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. so like, pls send your comments and suggestions to the Bioperl mailing list, preferably. your participation is much appreciated 🫶

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🩷 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. why? because so many experienced and reponsive experts will be able look at the problem and quickly address it. bestie pls include a thorough description of the problem with code and data examples if at all possible 🙏

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

---

👑 AUTHOR - Jason Stajich 👑

Email jason-at-bioperl-dot-org

(shoutout to Jason, main character energy fr fr 💖)

---

📖 APPENDIX 📖

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ — so if you see an underscore, that's your sign it's an inside-job method, iykyk 🔥

---

and that's the whole page, bestie!! 💅 this was perl v5.32.1, dated 2021-08-15, from the Bio::S...tigrxml(3pm) manual — go forth and parse some TIGR XML, you absolute legend 🎀✨🦋