Bio::S...ciitree(3pm)

💖 NAME 💖

Bio::SeqIO::asciitree — asciitree sequence input/output stream. And this whole manual is Bio::S...ciitree(3pm), user contributed Perl documentation, no cap. ✨

🌸 SYNOPSIS 🌸

         # It is probably best not to use this object directly, but
         # rather go through the SeqIO handler system. Go:

           $instream  = Bio::SeqIO->new(-file => $filename,
                                        -format => 'chadoxml');
           $outstream = Bio::SeqIO->new(-file => $filename,
                                        -format => 'asciitree');

           while ( my $seq = $instream->next_seq() ) {
                   $outstream->write_seq();
           }

🦋 DESCRIPTION 🦋

This is a WRITE-ONLY SeqIO module, bestie. It writes a Bio::SeqI object containing nested SeqFeature objects in such a way that the SeqFeature containment hierarchy is visible as a tree structure. It's giving tree view realness. 🌳

💌 FEEDBACK 💌

📬 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. 🫶

• bioperl-l@bioperl.org — General discussion
• http://bioperl.org/wiki/Mailing_lists — About the mailing lists

🫶 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and responsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR - Chris Mungall 👑

Email cjm@fruitfly.org

📚 APPENDIX 📚

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _.

🔍 show_detail

• Title: show_detail
• Usage: $obj->show_detail($newval)
• Function:
• Example:
• Returns: value of show_detail (a scalar)
• Args: on set, new value (a scalar or undef, optional)

🔁 next_seq

• Title: next_seq
• Usage: $seq = $stream->next_seq()
• Function: returns the next sequence in the stream
• Returns: Bio::Seq object
• Args:

✍️ write_seq

• Title: write_seq
• Usage: $stream->write_seq($seq)
• Function: writes the $seq object (must be seq) to the stream
• Returns: 1 for success and 0 for error
• Args: array of 1 to n Bio::SeqI objects

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k bye bestie 💅 this was Bio::S...ciitree(3pm) from perl v5.32.1, dated 2021-08-15. periodt. 👑