Bio::S...uctureI(3pm)

🦋 NAME 🦋

Bio::SeqFeature::Gene::GeneStructureI — a feature representing an arbitrarily complex structure of a gene

(also this is from the User Contributed Perl Documentation, just so u know where ur at bestie 💅)

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✨ SYNOPSIS ✨

  #documentation needed

bestie. babe. it literally says documentation needed. we're all just vibing here on faith 🫶

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🌸 DESCRIPTION 🌸

A feature representing a gene structure.

That's it. That's the whole description. Lowkey iconic of it to say so little and still be load-bearing 😭

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💬 FEEDBACK 💬

💌 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules — fr fr, they mean it. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. 🥹

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫶 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Like, respectfully, the maintainer is not ur personal help desk bestie 🙈 — many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. (Code + data examples = the way. no cap. 🧚)

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR - Hilmar Lapp 👑

Email hlapp@gmx.net

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📚 APPENDIX 📚

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ — that underscore is the "do not touch, this is backstage" signal, iykyk 💀

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🧬 transcripts

• Title: transcripts()
• Usage:

@transcripts = $gene->transcripts();

• Function: Get the transcript features/sites of this gene structure.

See Bio::SeqFeature::Gene::TranscriptI for properties of the returned objects.

• Returns: An array of Bio::SeqFeature::Gene::TranscriptI implementing objects representing the promoter regions or sites.
• Args: (nothing, it's a no-args moment ✨)

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🎀 promoters

• Title: promoters()
• Usage:

@prom_sites = $gene->promoters();

• Function: Get the promoter features/sites of this gene structure.

Note that OO-modeling of regulatory elements is not stable yet. This means that this method might change or even disappear in a future release. Be aware of this if you use it.

⚠️ okay so this one is unstable. it might change, it might straight up disappear in a future release. if u use it, use it with ur eyes open bestie 😭

• Returns: An array of Bio::SeqFeatureI implementing objects representing the promoter regions or sites.
• Args: (nada 🌈)

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🦋 exons

• Title: exons()
• Usage:

@exons = $gene->exons();
@inital = $gene->exons('Initial');

• Function: Get all exon features or all exons of specified type of this gene structure.

Refer to the documentation of the class that produced this gene structure object for information about the possible types.

See Bio::SeqFeature::Gene::ExonI for properties of the returned objects.

• Returns: An array of Bio::SeqFeature::Gene::ExonI implementing objects representing the exon regions.
• Args: An optional string specifying the type of the exon.

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💜 introns

• Title: introns()
• Usage:

@introns = $gene->introns();

• Function: Get all introns of this gene structure.
• Returns: An array of Bio::SeqFeatureI implementing objects representing the introns.
• Args: (none, she's simple and she's slaying 💅)

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🍓 poly_A_sites

• Title: poly_A_sites()
• Usage:

@polyAsites = $gene->poly_A_sites();

• Function: Get the poly-adenylation features/sites of this gene structure.
• Returns: An array of Bio::SeqFeatureI implementing objects representing the poly-adenylation regions or sites.
• Args: (empty, as always 💖)

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🌈 utrs

• Title: utrs()
• Usage:

@utr_sites = $gene->utrs();

• Function: Get the UTR features/sites of this gene structure.

See Bio::SeqFeature::Gene::ExonI for properties of the returned objects.

• Returns: An array of Bio::SeqFeature::Gene::ExonI implementing objects representing the UTR regions or sites.
• Args: (nothing to pass, just vibes ✨)

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and that's the whole page bestie!! 🎀 This lil gem lives in perl v5.32.1, dated 2021-08-15, filed under Bio::S...uctureI(3pm). Take care of her, she's doing her best out here 🫶💖