Bio::S...AResult(3pm)

💖 Bio::S...AResult(3pm) — aka Bio::Search::Result::WABAResult 💖

okay bestie, sit down, hydrate, because we're talking about Bio::Search::Result::WABAResult — a lil' result object for WABA alignment output, from the Bioperl world. it's in the Bio::S...AResult(3pm) manual, and it is genuinely the chillest little object you'll ever meet. no cap. 🦋

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✨ NAME ✨

Bio::Search::Result::WABAResult — the Result object for WABA alignment output. that's her. that's the whole job. 👑

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🌸 SYNOPSIS 🌸

# use this object exactly as you would a GenericResult # the only extra
method is query_database which is the # name of the file where the query
sequence came from

literally that's it. she's a GenericResult with one extra trick and zero drama. 💅

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🎀 DESCRIPTION 🎀

so this object exists for WABA result output, and here's the tea: there is little difference between this object and a GenericResult, except that she brings along one extra method called query_database. that's the glow-up. 🫶

⚠️ heads up though: expect many of the fields for GenericResult to be empty. why? because WABA was not intended to provide a lot of extra information other than the alignment. she said "i'm here to align, not to overshare." 💀

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💌 FEEDBACK 💌

Mailing Lists 📬

user feedback is an integral part of the evolution of this and other Bioperl modules, fr fr. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated. 🥹

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support 🆘

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. many experienced and reponsive experts will be able look at the problem and quickly address it. please include a thorough description of the problem with code and data examples if at all possible. the more detail the better, bestie. 🌈

Reporting Bugs 🐛

report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

go off, report that bug, you're doing amazing sweetie. 🐞✨

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👑 AUTHOR - Jason Stajich 👑

Email jason@bioperl.org

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📖 APPENDIX 📖

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _. iykyk. 🧚

new 🌱

Title   : new
Usage   : my $obj = Bio::Search::Result::WABAResult->new();
Function: Builds a new Bio::Search::Result::WABAResult object
Returns : Bio::Search::Result::WABAResult
Args    : -query_database => "name of the database where the query came from"

builds you a brand new Bio::Search::Result::WABAResult object. main character energy from the very first line. ✨

query_database 🗂️

Title   : query_database
Usage   : $obj->query_database($newval)
Function: Data field for the database filename where the
          query sequence came from
Returns : value of query_database
Args    : newvalue (optional)

it's the data field for the database filename where the query sequence came from. the one (1) extra method. she ate. 💅

All other methods are inherited from Bio::Search::Result::GenericResult 🧬

see the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module. that's where all the other lore lives, bestie. 📚

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perl v5.32.1 🌸 2021-08-15 — and that's the Bio::S...AResult(3pm) page, signed off with love from the manual, mwah 💋 go read your alignments, you gorgeous nerd. 🫶💖