Bio::S...::Fasta(3pm)

✨ Bio::S...::Fasta ✨

okay bestie, so this is the manual page for Bio::Search::Hit::Fasta (you'll see it written as Bio::S...::Fasta(3pm) when it's all squished into the header, and it lives in the User Contributed Perl Documentation section, iykyk) 💅

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🌸 NAME 🌸

Bio::Search::Hit::Fasta — it's a Hit object, but make it Fasta-specific. Like, it holds hits that were generated by Fasta. That's the whole vibe 🦋

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✨ SYNOPSIS ✨

ngl you would not normally make these yourself, bestie. They get produced for you by Bio::SearchIO::fasta. But here's what it looks like anyway:

# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta

use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);

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💖 DESCRIPTION 💖

so Bio::Search::Hit::HitI objects are these data structures that hold info about specific hits you got during a library search. Some of that info is algorithm-specific (that's the ✨spicy✨ part), but other bits are generally defined — like the ability to grab alignment objects that correspond to each hit. so you can still do your normal stuff with them, no cap 🫶

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🔥 SEE ALSO 🔥

• Bio::Search::Hit::HitI
• Bio::Search::Hit::GenericHit
• Bio::SearchIO::fasta

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🎀 FEEDBACK 🎀

💌 Mailing Lists

user feedback is literally an integral part of the evolution of this and other Bioperl modules, fr fr. send your comments and suggestions preferably to one of the Bioperl mailing lists. your participation is much appreciated 🥺

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫶 Support

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. so many experienced and reponsive experts will be able look at the problem and quickly address it. please include a thorough description of the problem with code and data examples if at all possible 🙏

🐛 Reporting Bugs

report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR - Aaron Mackey 👑

Email amackey-at-virginia.edu

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📖 APPENDIX 📖

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ (iykyk that's the secret-handshake prefix 💅)

_initialize

Function: where the heavy stuff will happen when new is called

AUTOLOAD

Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL

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perl v5.32.1 · 2021-08-15 — and that's the whole page, bestie 💖 go forth and hit-search, you absolute main character 🌈⭐