Bio::R...Sample(3pm)
π NAME π
Bio::Roary::UniqueGenesPerSample β bestie, this little icon takes in the clustered file and produces a sorted file with the frequency of each sample's unique genes. That's it. That's the whole job. And it slays at it. β¨
(You'll see this page filed under Bio::R...Sample(3pm) in the User Contributed Perl Documentation, because manual page names get truncated and honestly? She's mysterious like that. π)
πΈ VERSION πΈ
version 3.13.0 β this is the era we're living in, no cap. π
β¨ SYNOPSIS β¨
Okay so here's the whole vibe. Take in the clustered file and produce a sorted file with the frequency of each sample's unique genes:
use Bio::Roary::UniqueGenesPerSample;
my $obj = Bio::Roary::SequenceLengths->new(
clustered_proteins => 'clustered_proteins',
output_filename => 'output_filename',
);
$obj->write_unique_frequency;
Not me noticing the class in that constructor is Bio::Roary::SequenceLengths while the use line up top is Bio::Roary::UniqueGenesPerSampleβ¦ π I am copying that exactly because I do not start drama with other people's source code. Reproduce it character for character, periodt. π«Ά
π AUTHOR π
Andrew J. Page <ap13@sanger.ac.uk> β the main character who wrote this. Respect. π
π COPYRIGHT AND LICENSE π
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
So yes bestie, it's free software, GPL v3, June 2007 edition. Go forth and remix responsibly. π
Okay that's the whole page, you ate it up. π This has been Bio::R...Sample(3pm) from the User Contributed Perl Documentation, running on perl v5.30.0, dated 2019-11-08. Byeee, ily, go count some unique genes π¦β¨π
π¦ where this page comes from
- debian bookworm: roary 3.13.0+dfsg-1 Β· GPL-3.0-only
- ubuntu jammy: roary 3.13.0+dfsg-1 Β· GPL-3.0-only
- ubuntu noble: roary 3.13.0+dfsg-1 Β· GPL-3.0-only
- π girlified by deepseek-ai/DeepSeek-V4.1-Flash on : a language model's rewrite of the original, under its terms