Bio::R...rGenes(3pm)

📦
version 3.13.0 · 3 versions
, in debian bookworm, ubuntu jammy, ubuntu noble

💖 Bio::Roary::OrderGenes 💖

okay bestie, welcome to the perl manual for Bio::Roary::OrderGenes — it lives in the Bio::R...rGenes(3pm) manpage section, which is giving "the header got truncated for dramatic effect" but we move 💅

✨ NAME ✨

Bio::Roary::OrderGenes — take in GFF files and create a matrix of what genes are beside what other genes 🧬🦋

like. it literally just wants to know who's sitting next to who. it's the seating chart of your genome. no cap.

🌸 VERSION 🌸

version 3.13.0

🎀 SYNOPSIS 🎀

so the vibe here is: you take in the analyse groups, and you create a matrix of what genes are beside what other genes. that's the whole plot. that's the movie.

use Bio::Roary::OrderGenes;

my $obj = Bio::Roary::OrderGenes->new(
  analyse_groups_obj => $analyse_groups_obj,
  gff_files => ['file1.gff','file2.gff']
);
$obj->groups_to_contigs;
🫶 notice how the object gets an analyse_groups_obj and a list of gff_files, and then groups_to_contigs does the thing. keep those names exactly as written, bestie, they are not negotiable.

👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk>

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

and that's the whole page, no crumbs left 💜

this icon of a manual page is perl v5.30.0, dated 2019-11-08, filed under Bio::R...rGenes(3pm) — she's been iconic since 2013 and she's still slaying ✨🎀 periodt 💅

📦 where this page comes from