Bio::R...gnments(3pm)

🌸 Bio::R...gnments(3pm) — the Bio::Roary::MergeMultifastaAlignments page 🌸

okay bestie, welcome to the manual page for Bio::R...gnments(3pm), straight out of the User Contributed Perl Documentation collection. This is the Perl module that does the merging thing and honestly it's giving humble icon energy. Let's get into it 💖

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✨ NAME ✨

Bio::Roary::MergeMultifastaAlignments — merge multifasta alignment files that have equal numbers of sequences. That's the whole job. That's the vibe. 💅

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🎀 VERSION 🎀

version 3.13.0 — yeah, that's the one, no cap.

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🦋 SYNOPSIS 🦋

So here's the deal: you're merging multifasta alignment files that all have equal numbers of sequences. Each sequence in each file gets concatenated together with its counterpart. And heads up, bestie — it is assumed the sequences are in the correct order. Nobody's checking that for you. You gotta come correct. 😭

use Bio::Roary::MergeMultifastaAlignments;

my $obj = Bio::Roary::MergeMultifastaAlignments->new(
  multifasta_files => [],
  output_filename  => 'output_merged.aln'
);
$obj->merge_files;

Like, you make the object, you pass it your multifasta_files, you tell it your output_filename, and then you call merge_files and let it cook. ✨

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the mastermind, the main character who wrote this whole thing. Respect. 🫶

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🌈 COPYRIGHT AND LICENSE 🌈

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

It's free software, licensed under:

The GNU General Public License, Version 3, June 2007

Which is to say: it's free, it's open, it's iconic, it's legally yours to use under those terms. 🎀

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and that's the whole page, bestie — no crumbs left. this was rendered by perl v5.30.0, dated 2019-11-08, under the name Bio::R...gnments(3pm). go forth and concatenate responsibly 💜🧚🌸