Bio::R...neFiles(3pm)

πŸ“¦
version 3.13.0 Β· 3 versions
, in debian bookworm, ubuntu jammy, ubuntu noble

πŸ’– NAME πŸ’–

Bio::Roary::LookupGeneFiles β€” bestie, this little icon takes in an ordering of genes plus a directory, and hands you back an ordered list of file locations. That's the whole job. It's giving personal shopper for gene files. πŸ›οΈβœ¨

Oh and heads up, the manual name you're reading right now is Bio::R...neFiles(3pm) (yeah the title got truncated, she's mysterious like that πŸ’…).


✨ VERSION ✨

version 3.13.0 πŸŽ€


🌸 SYNOPSIS 🌸

okay so take an ordering of genes and a directory, and get back an ordered list of file locations. no cap, that's it:

use Bio::Roary::LookupGeneFiles;

my $obj = Bio::Roary::LookupGeneFiles->new(
    multifasta_directory        => 'pan_genome_sequences',
    ordered_genes           => ['gene5','gene2','gene3'],

  );
$obj->ordered_gene_files();

so you spin up your object with multifasta_directory pointing at 'pan_genome_sequences' and ordered_genes set to ['gene5','gene2','gene3'], and then you hit it with ->ordered_gene_files() and it's done. main character behavior fr fr πŸ¦‹


🫢 AUTHOR 🫢

Andrew J. Page <ap13@sanger.ac.uk> πŸ‘‘


This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. πŸ’œ

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

and that's the whole page, bestie!! 🌈 this gem was rendered by perl v5.30.0 on 2019-11-08, and yes it really does sign itself Bio::R...neFiles(3pm) at the bottom. slay, go order some genes. πŸŽ€πŸ’–βœ¨

πŸ“¦ where this page comes from