Bio::R...eCdhit(3pm)

💖 Bio::R...eCdhit — the 3pm manual page, but make it cute 💖

okay bestie, gather round, because we're talking about Bio::R...eCdhit — yes that's the short lil name for this thing, and the full manual-page title is Bio::R...eCdhit(3pm). She lives in section 3pm of the manual, she's a Perl module, and she is so much cooler than she sounds. 🎀

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✨ NAME ✨

Bio::Roary::IterativeCdhit — she runs CDhit over and over again, each time with a lower threshold, and she yeets out the full clusters as she goes. no cap. 🔥

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🌸 VERSION 🌸

version 3.13.0 — that's the one, that's her era. 💅

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🦋 SYNOPSIS 🦋

okay so the whole vibe is: run CDhit iteratively, with thresholds that keep shrinking, deleting the full clusters every single round. it's giving "divide and conquer but make it glamorous". ✨

use Bio::Roary::IterativeCdhit;

my $obj = Bio::Roary::IterativeCdhit->new(
  output_cd_hit_filename   => 'output_cd_hit_filename.fa',
  output_combined_filename => 'output_combined_filename.fa',
  number_of_input_files     => 5,
  output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
);
$obj->run;

look at her go, look at her run. 👑

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🫶 AUTHOR 🫶

Andrew J. Page <ap13@sanger.ac.uk> — the icon who wrote her, we love and respect. 💜

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👑 COPYRIGHT AND LICENSE 👑

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

so yes, she's free, she's open, she's licensed, periodt. 🎀

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and that's the whole page, bestie. the footer energy for the record: perl v5.30.0, dated 2019-11-08, and the manual name is Bio::R...eCdhit(3pm). mwah. 💋✨🌸