Bio::R...al::Mcl(3pm)

💖 NAME 💖

Bio::Roary::External::Mcl — it's literally a lil wrapper around MCL that takes your blast results in and hands you back clustered results. bestie it's giving middle-man but make it useful 🦋

oh and hi, you're reading the manual for Bio::R...al::Mcl(3pm), the User Contributed Perl Documentation version. welcome to the group chat 💅

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✨ VERSION ✨

version 3.13.0 🌸

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🎀 SYNOPSIS 🎀

okay so literally all it does: wraps MCL, eats blast results, serves clustered results. no cap. here's the whole vibe:

use Bio::Roary::External::Mcl;

my $mcl= Bio::Roary::External::Mcl->new(
  blast_results     => 'db',
  mcxdeblast_exec   => 'mcxdeblast',
  mcl_exec          => 'mcl',
  output_file       => 'output.groups'
);

$mcl->run();

look at her. four args and a run(). iconic behavior honestly 👑

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the main character who wrote this 🫶

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🌈 COPYRIGHT AND LICENSE 🌈

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

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fr fr, GPL v3, June 2007. that's the license. respect it 💜

and that's the whole page bestie — no notes, no bugs section, no SEE ALSO, just a tiny tidy wrapper doing its thing. ✨

sign-off time 🎀 this was built for perl v5.30.0, dated 2019-11-08, and yeah it's still Bio::R...al::Mcl(3pm) on the tin. slay. periodt. 💖