Bio::R...::Mafft(3pm)

💖 NAME 💖

Bio::Roary::External::Mafft — bestie, it's literally just a wrapper to run mafft. That's the whole job. No cap. ✨

So this page lives in the User Contributed Perl Documentation, and honestly? She's giving helper-module energy. The Bio::Roary::External::Mafft module exists so you don't have to wrangle mafft yourself — you hand it a file, it hands you an alignment. Iconic behaviour. 💅

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🌸 VERSION 🌸

version 3.13.0

(Yes, she has a version number. She's a real module, not a vibe. 🎀)

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✨ SYNOPSIS ✨

Okay so the whole point of this module is: wrapper to run mafft. And here's exactly how you summon her, verbatim, don't @ me:

use Bio::Roary::External::Mafft;

     my $mafft_obj = Bio::Roary::External::Mafft->new(
       input_filename  => $fasta_file,
       output_filename => $fasta_file.'.aln',
       job_runner      => 'Local'
     );
     $mafft_obj->run();

So the way that works, bestie: you use the module, you build a Bio::Roary::External::Mafft->new(...) object passing in your input_filename, an output_filename (in the example she's literally just the input plus '.aln', which is such a mood 🦋), and a job_runner of 'Local'. Then you call $mafft_obj->run() and let her cook. 🔥

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the legend who wrote this. Show some respect, she's the main character here. 🙌

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💜 COPYRIGHT AND LICENSE 💜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

And it's free software, licensed under:

The GNU General Public License, Version 3, June 2007

So yeah — free as in freedom, GPLv3, June 2007 edition. Read the license, it's giving legal-but-fabulous. 📜✨

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And that's the whole page, bestie! 🫶 This was Bio::R...::Mafft(3pm) — rendered on 2019-11-08 — and she was built with perl v5.30.0. Periodt. 💅🌸

go align some sequences, you absolute icon 🌈