Bio::R...FromGFF(3pm)

💖 NAME 💖

Bio::Roary::ContigsToGeneIDsFromGFF — bestie, this is the little module that reads a GFF file and pulls out the ordered gene ids sitting on every contig. Efficiently. It's giving "I know exactly where everything is and I'm not sorry about it." ✨

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🎀 VERSION 🎀

version 3.13.0 — yes queen, she's got a version number and she's proud of it 💅

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🌸 SYNOPSIS 🌸

okay so here's the vibe: you parse a GFF, and you efficiently extract ordered gene ids on each contig. that's the whole job. no cap.

use Bio::Roary::ContigsToGeneIDsFromGFF;

my $obj = Bio::Roary::ContigsToGeneIDsFromGFF->new(
  gff_file   => 'abc.gff'
);
$obj->contig_to_ids;

so you make the object, you hand it your gff_file (in this case 'abc.gff', iconic name tbh 🦋), and then you call contig_to_ids on it and she does the thing. periodt.

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🫶 AUTHOR 🫶

Andrew J. Page <ap13@sanger.ac.uk> — the legend herself. main character energy fr fr 👑

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👑 COPYRIGHT AND LICENSE 👑

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. 🩷

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

like, actually free. go off. read the license, it's not a vibe check you skip 🙈

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and that's the whole page, bestie 💜 no more sections, no hidden lore, we ate and left no crumbs 🍓

this was perl v5.30.0, dated 2019-11-08, from Bio::R...FromGFF(3pm) — mwah, see you in the next manpage 🌈✨💖