Bio::R...Groups(3pm)

💖 NAME 💖

okay so bestie, welcome to the Bio::R...Groups(3pm) manual page 💅 and the star of the show is Bio::Roary::AnnotateGroups — what it does is take in a group file plus all the associated GFF files for the isolates, and then it updates the group name to the gene name. that's the whole vibe, no cap ✨

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✨ VERSION ✨

version 3.13.0 — she's giving current, she's giving slay 🎀

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🌸 SYNOPSIS 🌸

so like, take in a group file and associated GFF files for the isolates and update the group name to the gene name 🦋 literally the entire point:

use Bio::Roary::AnnotateGroups;

my $obj = Bio::Roary::AnnotateGroups->new(
  gff_files   => ['abc.gff','efg.gff'],
  output_filename   => 'example_output.fa',
  groups_filename => 'groupsfile',
);
$obj->reannotate;

not me showing you the exact keys to pass in 👀 gff_files is an arrayref of your GFF files, output_filename is where the output goes, groups_filename is your groups file — then you hit it with $obj->reannotate and she reannotates, periodt 💅

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the icon, the moment, the main character who wrote this 🫶

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📜 COPYRIGHT AND LICENSE 📜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. 🌈

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

fr fr it's GPL v3, June 2007, that's the license, respect the license bestie 💜

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and that's the whole page! this was rendered by perl v5.30.0 and dated 2019-11-08, and the manual is Bio::R...Groups(3pm) — thanks for reading, ily, go annotate some groups 💖✨🎀🦋