Bio::R...stering(3pm)

💖 NAME 💖

Bio::Roary::AccessoryClustering — bestie, this is the little Perl module that grabs a clusters file from CD-hit, plus the fasta file, and hands you back a fasta file with the full clusters taken out. That's it. That's the whole job. 🎀

It's part of the Bio::Roary situation, and it lives on your system as a man page under Bio::R...stering(3pm), served up by the perl man pages collection. iykyk. ✨

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🌸 VERSION 🌸

version 3.13.0 💅

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✨ SYNOPSIS ✨

Take a clusters file from CD-hit and the fasta file and output a fasta file without full clusters. Literally the entire vibe of this module, no cap.

use Bio::Roary::AccessoryClustering;

my $obj = Bio::Roary::AccessoryClustering->new(
    input_file        => 'accessory_binary_genes.fa',
    identity           => 0.96,
    cpus => 10,
  );
$obj->sample_weights();

okay so quick tour of what's happening up there: you use the module, you build yourself a shiny new object with new, and you pass it an input_file of 'accessory_binary_genes.fa', an identity of 0.96, and cpus of 10. Then you call sample_weights() on it and let it do its thing. main character energy fr fr 🦋

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the icon who wrote this 💜

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🎀 COPYRIGHT AND LICENSE 🎀

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

so yeah, it's free software, you're covered by the GPL v3 from June 2007, go off 🫶

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ngl bestie, if you're here for the whole SEE ALSO situation — there isn't one on this page, so don't go looking 👀

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Sign-off time: this page was rendered by perl v5.30.0 on 2019-11-08, and it documents Bio::R...stering(3pm) from the User Contributed Perl Documentation crew. mwah, take care of her 🌈💖🌸