Bio::R...yFasta(3pm)

okay bestie, buckle up 💅 this is the manual page for Bio::R...yFasta(3pm), filed under User Contributed Perl Documentation — aka the 3pm section, aka where Perl module docs live. it's short, it's sweet, it's all facts, zero filler. let's go 🦋

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✨ NAME ✨

Bio::Roary::AccessoryBinaryFasta — bestie, this module outputs a FASTA file which represents the binary presence and absence of genes in the accessory genome. that's the whole vibe. 🎀

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🌸 VERSION 🌸

version 3.13.0. yes, that exact one. no cap. ✨

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🧚 SYNOPSIS 🧚

so the synopsis literally says it: output a FASTA file which represents the binary presence and absence of genes in the accessory genome. and here's how you actually summon it, fr fr:

use Bio::Roary::AccessoryBinaryFasta;
my $obj = Bio::Roary::AccessoryBinaryFasta->new(input_files => ['abc','efg'],
  groups_to_files => {'group_1' => ['abc'], group_2 => ['abc', 'efg']}
);
$obj->create_accessory_binary_fasta();

let's break the vibe check down 🫶:

• use Bio::Roary::AccessoryBinaryFasta; — pull the module in first, obviously.
• Bio::Roary::AccessoryBinaryFasta->new(...) — the constructor, and it's giving two named args:
  • input_files — here it's handed ['abc','efg'], an arrayref of your input files.
  • groups_to_files — a hashref where 'group_1' points at ['abc'] and group_2 points at ['abc', 'efg']. (yes, one key is quoted and one isn't in the original — iconic, we don't fix it, we respect it 🙈)
• $obj->create_accessory_binary_fasta(); — the actual call that does the thing. the main character moment. 👑

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the icon, the legend, the author. 💖

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💜 COPYRIGHT AND LICENSE 💜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

so yeah — free software, GPL v3, June 2007 energy. 🎀

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aaaand that's the whole page bestie 💋 no hidden sections, no secret flags, just pure module. this one runs on perl v5.30.0, dated 2019-11-08, and it goes by Bio::R...yFasta(3pm). mwah, go write some FASTA 🌈💅