Bio::M...coring(3pm)

✨ NAME ✨

Bio::Matrix::Scoring — it's an object that can hold scoring matrix information 💖

Bestie, you're reading the Bio::M...coring(3pm) page from the User Contributed Perl Documentation, and yes it's giving bioperl, it's giving matrices, it's giving exactly what you need. Let's go 🫶

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🎀 SYNOPSIS 🎀

use Bio::Matrix::Scoring;

That's it. That's the whole vibe check. Load it and you're in 🦋

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🌸 DESCRIPTION 🌸

An object which can handle AA or NT scoring matrix information. Some transformation properties are available too. Periodt. 💅

Like, it literally just sits there holding your matrix data and the little numbers that describe it. Lowkey iconic. ✨

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💬 FEEDBACK 💬

📬 Mailing Lists 📬

User feedback is an integral part of the evolution of this and other Bioperl modules, fr fr. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated 🥹💖

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫶 Support 🫶

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. No cap — there are many experienced and reponsive experts who will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. The more detail the better, bestie 🙈

🐛 Reporting Bugs 🐛

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR - Jason Stajich 👑

Email jason-at-bioperl-dot-org

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📖 APPENDIX 📖

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ — iykyk, that underscore is the secret handshake 🤫

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🌟 new 🌟

Builds a new Bio::Matrix::Scoring object. Fresh out the box, bestie ✨

Title   : new
Usage   : my $obj = Bio::Matrix::Scoring->new();
Function: Builds a new Bio::Matrix::Scoring object
Returns : an instance of Bio::Matrix::Scoring
Args    :

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🌟 entropy 🌟

Gives you the entropy value, and yes you can set it too 💫

Title   : entropy
Usage   : $obj->entropy($newval)
Function:
Example :
Returns : value of entropy (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 expected_score 🌟

The expected value, getter-and-setter style 🎀

Title   : expected_score
Usage   : $obj->expected_score($newval)
Function:
Example :
Returns : value of expected (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 scale 🌟

scale value goes here, bestie 🦋

Title   : scale
Usage   : $obj->scale($newval)
Function:
Example :
Returns : value of scale (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 scale_value 🌟

And here's scale_value, its bestie 💜

Title   : scale_value
Usage   : $obj->scale_value($newval)
Function:
Example :
Returns : value of scale_value (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 description 🌟

description — say a little something about yourself 💬

Title   : description
Usage   : $obj->description($newval)
Function:
Example :
Returns : value of description (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 database 🌟

database — where this matrix came from 🗂️

Title   : database
Usage   : $obj->database($newval)
Function:
Example :
Returns : value of database (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 lowest_score 🌟

The lowest_score. The floor. The bottom of the barrel, respectfully 📉

Title   : lowest_score
Usage   : $obj->lowest_score($newval)
Function:
Example :
Returns : value of lowest_score (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 highest_score 🌟

The highest_score. Main character energy, obviously 👑

Title   : highest_score
Usage   : $obj->highest_score($newval)
Function:
Example :
Returns : value of highest_score (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 lambda 🌟

lambda 🍓

Title   : lambda
Usage   : $obj->lambda($newval)
Function:
Example :
Returns : value of lambda (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🌟 H 🌟

Just H. One letter. Immaculate ✨

Title   : H
Usage   : $obj->H($newval)
Function:
Example :
Returns : value of H (a scalar)
Args    : on set, new value (a scalar or undef, optional)

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🎀 That's the whole page, bestie. Every method, every arg, every default — nothing skipped, nothing invented. Go build something slay 💅

Sign-off time: this lil doc was generated by perl v5.32.1 on 2021-08-15, and it belongs to the Bio::M...coring(3pm) manual page. Byeeee 🦋💖🌈