Bio::M...:phylip(3pm)

✨ NAME ✨

Bio::Matrix::IO::phylip — a parser for PHYLIP distance matricies 💖 (and yes, the man page itself shows up as Bio::M...:phylip(3pm) in your pager, that's just how it's filed, bestie).

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🌸 SYNOPSIS 🌸

okay so literally here's the whole vibe in four lines:

use Bio::Matrix::IO;
my $parser = Bio::Matrix::IO->new(-format   => 'phylip',
                                  -file     => 't/data/phylipdist.out');
my $matrix = $parser->next_matrix;

that's it. that's the whole thing. iconic. 👑

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🦋 DESCRIPTION 🦋

bestie. listen. this is a parser for PHYLIP distance matrix output. it takes that output and hands you back a matrix object. that's the job. it does the job. 💅

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🫶 FEEDBACK 🫶

💌 Mailing Lists

user feedback is an integral part of the evolution of this and other Bioperl modules — like, genuinely, no cap. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated. 🥺

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🎀 Support

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. many experienced and responsive experts will be able look at the problem and quickly address it. please include a thorough description of the problem with code and data examples if at all possible. the more detail the better, fr fr. 🔍

🐛 Reporting Bugs

report bugs to the Bioperl bug tracking system so we can keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR - Jason Stajich 👑

email jason-at-bioperl-dot.org ✨

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💀 APPENDIX 💀

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ (iykyk).

🧚 new

Title   : new
Usage   : my $obj = Bio::Matrix::IO::phylip->new();
Function: Builds a new Bio::Matrix::IO::phylip object
Returns : an instance of Bio::Matrix::IO::phylip
Args    :

builds a brand new Bio::Matrix::IO::phylip object. returns an instance of it. no args, it just appears. main character energy. ⭐

🌈 next_matrix

Title   : next_matrix
Usage   : my $matrix = $parser->next_matrix
Function: Get the next result set from parser data
Returns : L<Bio::Matrix::PhylipDist>
Args    : none

gets the next result set from the parser data. hands you back an L<Bio::Matrix::PhylipDist>. no args needed. obsessed. 😭

🍓 write_matrix

Title   : write_matrix
Usage   : $matio->write_matrix($matrix)
Function: Write out a matrix in the phylip distance format
Returns : none
Args    : L<Bio::Matrix::PhylipDist>

writes out a matrix in the phylip distance format. returns none — like, nothing comes back, it just Does The Thing. takes an L<Bio::Matrix::PhylipDist> as its arg. ate. 🔥

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and that's the whole page, bestie 🫶 this was perl v5.32.1, dated 2021-08-15, filed under Bio::M...:phylip(3pm) — go parse something gorgeous 💖✨🎀