Bio::G...script2(3pm)

📦
version 2.40 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 Bio::G...script2 — the "transcript2" glyph 💖

okay so bestie, gather round 🫶 you're reading the <pink>User Contributed Perl Documentation</pink> for <cyan>Bio::G...script2(3pm)</cyan> (yes that's the header, it's giving "truncated for the aesthetic" and honestly? iconic 💅). this page is the whole vibe on one specific glyph and i'm gonna walk you through it, no cap.

✨ NAME ✨

Bio::Graphics::Glyph::transcript2 — the <hotpink>"transcript2"</hotpink> glyph 👑

✨ SYNOPSIS ✨

See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

like, that's the whole synopsis. go read those two first, fr fr 📚

✨ DESCRIPTION ✨

so this glyph is for drawing transcripts. it's basically the transcript glyph's cooler sibling, except: if there's sufficient room, the terminal exon gets shaped like an arrow so you can literally see which way transcription is going 🏹➡️. and if there isn't enough room? no worries, a small arrow gets drawn instead. tiny arrow, big energy. 💫

🎀 OPTIONS 🎀

these next ones are the standard</> options that literally every Glyph has. for the full deep dive, go see Bio::Graphics::Glyph, okay? i'm not gatekeeping, i'm redirecting. 😌

  • -fgcolor — Foreground color. default is black 🖤
  • -outlinecolor — synonym for -fgcolor. same thing, different font.
  • -bgcolor — Background color. default is turquoise 🦋 (obsessed with this default actually)
  • -fillcolor — synonym for -bgcolor. yes bestie, also turquoise.
  • -linewidth — Line width. default is 1 📏
  • -height — Height of glyph. default is 10
  • -font — Glyph font. default is gdSmallFont ✍️
  • -connector — Connector type. default is 0 (false)
  • -connector_color — Connector color. default is black
  • -label — Whether to draw a label. default is 0 (false)
  • -description — Whether to draw a description. default is 0 (false)
  • -strand_arrow — Whether to indicate strandedness. default is 0 (false)
  • -hilite — Highlight color. default is undef (no color) 🌈

and then — plot twist — the <hotpink>alignment glyph</hotpink> also recognizes these glyph-specific options:

  • -arrow_length — Length of the directional arrow. default is 8 🏹
lowkey don't sleep on -arrow_length, it's the one that decides how much arrow you're getting. main character energy right there.

🐛 BUGS 🐛

Please report them. 📢 (that's it. that's the bug section. the original said it, i'm saying it, we're both saying it.)

💜 SEE ALSO 💜

go be nosy, here's the whole friend group 🫂:

  • Bio::Graphics::Panel
  • Bio::Graphics::Glyph
  • Bio::Graphics::Glyph::arrow
  • Bio::Graphics::Glyph::cds
  • Bio::Graphics::Glyph::crossbox
  • Bio::Graphics::Glyph::diamond
  • Bio::Graphics::Glyph::dna
  • Bio::Graphics::Glyph::dot
  • Bio::Graphics::Glyph::ellipse
  • Bio::Graphics::Glyph::extending_arrow
  • Bio::Graphics::Glyph::generic
  • Bio::Graphics::Glyph::graded_segments
  • Bio::Graphics::Glyph::heterogeneous_segments
  • Bio::Graphics::Glyph::line
  • Bio::Graphics::Glyph::pinsertion
  • Bio::Graphics::Glyph::primers
  • Bio::Graphics::Glyph::rndrect
  • Bio::Graphics::Glyph::segments
  • Bio::Graphics::Glyph::ruler_arrow
  • Bio::Graphics::Glyph::toomany
  • Bio::Graphics::Glyph::transcript
  • Bio::Graphics::Glyph::transcript2
  • Bio::Graphics::Glyph::translation
  • Bio::Graphics::Glyph::triangle
  • Bio::DB::GFF
  • Bio::SeqI
  • Bio::SeqFeatureI
  • Bio::Das
  • GD

👑 AUTHOR 👑

Lincoln Stein <lstein@cshl.org> ✨

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. 📝

and that's the page bestie!! 🌸🦋

this was perl v5.30.0, dated 2019-11-25, from Bio::G...script2(3pm) — thank you for coming to my ted talk, ily, go draw some arrows 💖✨🎀🫶

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