Bio::G...deogram(3pm)

📦
version 2.40 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 Bio::G...deogram — the heat_map_ideogram glyph 💖

okay bestie, buckle up, because this is the perl manual page for Bio::Graphics::Glyph::heat_map_ideogram and it's literally the moment. sit down, hydrate, and let's get into it 🫶

✨ SYNOPSIS ✨

See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

like. that's the whole synopsis. it's giving minimalist. it's giving "go read the other docs, babe." iconic behavior honestly 💅

🌸 DESCRIPTION 🌸

so what does this glyph actually do? it draws a chromosome ideogram — but not with cytobands, no ma'am. it uses scored features instead. periodt.

it's a hybrid, bestie. a collab, if you will. it's heat_map energy meets ideogram energy, and it accepts the options for both of them. main character crossover event 🦋

the classic usage? pair this glyph with an aggregator that groups scored features together with a centromere. think blast hits, think gene_density bins, etc. etc. — you name it, the aggregator lumps it in. the result is a chromosome ideogram whose bands have colors that vary proportionate to the feature score. so like, hotter score, hotter color. the vibe check is literally built into the visual. 🔥

🎀 OPTIONS 🎀

okay so, options. there are a LOT of them, but they're not here — they're borrowed, because this glyph is a hybrid and it said "I contain multitudes."

  • see Bio::Graphics::Glyph for a full explanation of the standard options ✨
  • see Bio::Graphics::Glyph::heat_map for an explanation of the heat_map options 🌡️
  • see Bio::Graphics::Glyph::ideogram for an explanation of the ideogram options 🧬

no cap, that's genuinely all this page says about options. go forth and read the other pages, i believe in you 🫶

💀 BUGS 💀

Please report them.

yes. that's it. that's the entire bug section. the devs were like "bugs exist. tell us." and honestly? relatable. if you find one, report it, bestie, don't just suffer in silence 😭

🔍 SEE ALSO 🔍

  • Bio::Graphics::Panel
  • Bio::Graphics::Glyph
  • Bio::DB::GFF
  • Bio::SeqI
  • Bio::SeqFeatureI
  • Bio::Das
  • GD

go read all of them. yes, all of them. i know it's a lot. you got this. 🍓

👑 AUTHOR 👑

Sheldon McKay <mckays@cshl.edu>

Copyright (c) 2006 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. 🌈

and that's the whole page, angel 💜 this was generated by perl v5.30.0 and dated 2019-11-25, which is genuinely ancient in internet years, but the glyph still ate and left no crumbs. mwah. 💅✨

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