Bio::G...oteSet(3pm)

✨ Bio::Graphics::Browser2::PluginSet ✨

okay bestie, welcome to the perl section of the manual (the <pink>3pm</pink> girlies know 💅). this whole page is lowkey the backstage pass for one class and one class only: Bio::Graphics::Browser2::PluginSet — and what is it, you ask? it's literally a set of plugins. that's it. that's the whole vibe. periodt. 🎀

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🦋 SYNOPSIS 🦋

None.

not me having zero example code to show you 😭 it's giving "read the methods, bestie." this thing is used internally by gbrowse & gbrowse_img, so it's not out here looking for main character energy — it's the stage crew. iconic behavior fr fr. 🫶

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💖 METHODS 💖

okay so here's where it gets juicy. three methods, three little moments, let's go 🌸

• $plugin_set = Bio::Graphics::Browser2::PluginSet->new($config,$state,@search_path) — constructor time, slay. it initializes the plugins according to the configuration, page settings and the plugin search path. and then? it returns an object. give it the $config, the $state, and the @search_path, and it hands you back a whole plugin set like it's nothing. obsessed. ✨
• $plugin_set->configure($database) — configure the plugins given the database. that's the whole thing. hand it a $database and it does the config glow-up. 🧚
• $plugin_set->annotate($segment,$feature_files,$rel2abs) — the big one, the finale, the moment 🔥 it runs plugin annotations on the $segment, and it adds the resulting feature files to the hash ref in $feature_files, which is shaped like this:

{track_name=>$feature_list}

and as for that $rel2abs argument? bestie it holds a coordinate mapper callback, but is currently unused. so like… it's invited to the party but it's not dancing. rip to $rel2abs honestly 💀 still gotta pass it tho, it's in the signature.

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🌈 SEE ALSO 🌈

• Bio::Graphics::Browser

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👑 AUTHOR 👑

the legend himself: Lincoln Stein <lstein@cshl.org>. 🫡

Copyright (c) 2005 Cold Spring Harbor Laboratory

now for the legal tea, and yes we're saying it properly because this part actually matters ☕:

• this package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either version 1, or at your option, any later version) or the Artistic License 2.0.
• refer to LICENSE for the full license text.
• in addition, please see DISCLAIMER.txt for disclaimers of warranty. read it, bestie, it's the "no promises" paragraph and it's doing its job 💅

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and that's the whole page, no cap. this was generated by perl v5.40.0, dated 2024-10-20, filed under the <pink>Bio::G...oteSet(3pm)</pink> girlies. go forth and configure responsibly 🦋✨💖