Bio::F...alysisI(3pm)

📦
version 1.7.8 · 3 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 NAME 💖

Bio::Factory::AnalysisI — bestie, it's an interface to an analysis tool factory ✨

🌸 SYNOPSIS 🌸

okay so listen — this is an interface module, meaning you literally do not instantiate it, like at all, don't even try 💅

Use the Bio::Tools::Run::AnalysisFactory module instead, okay?

use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;

🦋 DESCRIPTION 🦋

This interface is holding all the public methods for showing off the available analyses and for creating objects that represent them. it's giving backstage pass energy 🎀

🫶 FEEDBACK 🫶

💌 Mailing Lists

ngl, user feedback is literally an integral part of the evolution of this and other Bioperl modules 🧚 so send your comments and suggestions (preferably) to the Bioperl mailing list. Your participation is so much appreciated, fr fr 💖

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🌈 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

...rather than to the module maintainer directly 👑 Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible, bestie 🙈

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution ✨ Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR 👑

Martin Senger (martin.senger@gmail.com)

Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. slay 💅

💀 DISCLAIMER 💀

This software is provided "as is" without warranty of any kind. (yes bestie, as is, no cap, don't come for me 😭)

🌟 SEE ALSO 🌟

🎀 APPENDIX 🎀

okay this is actually the main documentation... the way that this is the whole point of the page 🙈

If you try to call any of these methods directly on this Bio::Factory::AnalysisI object you will get a not implemented error message. You need to call them on a Bio::Tools::Run::AnalysisFactory object instead. that's the vibe check, iykyk ✨

🍓 available_categories

Usage   : $factory->available_categories;
Returns : an array reference with the names of
          available categories
Args    : none

The analysis tools may be grouped into categories by their functional similarity, or by the similar data types they deal with. This method shows all available such categories. cute, right? 🎀

🌸 available_analyses

Usage   : $factory->available_analyses;
          $factory->available_analyses ($category);
Returns : an array reference with the names of
          all available analyses, or the analyses
          available in the given '$category'
Args    : none || category_name

Show available analyses. Their names usually consist of category analysis names, separated by ::. main character energy fr fr 💖

🦋 create_analysis

Usage   : $factory->create_analysis ($name);
Returns : a Bio::Tools::Run::Analyis object
Args    : analysis name

A real factory method creating an analysis object ✨ The created object gets all access and location information from the factory object. it's giving inheritance, iconic 💅

and that's the whole page bestie, go forth and analyze 🧚💖

perl v5.32.1 · 2021-08-15 · Bio::F...alysisI(3pm) — mwah, bye! 🎀✨

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