Bio::D...pecies(3pm)

✨ NAME ✨

okay so this is Bio::DB::SoapEUtilities::FetchAdaptor::species — it's the FetchAdaptor for 'taxonomy' efetch SOAP messages, bestie 💖 (it lives in the User Contributed Perl Documentation, and honestly? iconic of it).

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🌸 SYNOPSIS 🌸

Imported by Bio::DB::SoapEUtilities::FetchAdaptor as required. that's it, that's the whole vibe — no cap 🫶

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🦋 DESCRIPTION 🦋

so what does it actually do? it returns an iterator over Bio::Species objects 💅

my $fac = Bio::DB::SoapEUtilities->new;
my $taxio = $fac->efetch(-db => 'taxonomy', -id => 1394)->run(-auto_adapt=>1);
my $sp = $taxio->next_species;
$sp->binomial; # returns 'Bacillus caldolyticus'

and if you're sitting there like "wait, what object type am I even getting back?" — valid question, bestie, and here's how you check:

$class = $seqio->obj_class; # $class is 'Bio::Species'

that works for all Bio::DB::SoapEUtilities::FetchAdaptor objects, so it's giving main character energy across the whole family ✨

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💜 SEE ALSO 💜

• Bio::DB::SoapEUtilities
• Bio::DB::SoapEUtilities::FetchAdaptor

go read those too, iykyk 🎀

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🌈 FEEDBACK 🌈

💌 Mailing Lists

user feedback is an integral part of the evolution of this and other Bioperl modules, fr fr — like, the whole thing grows because you talk to us. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated 🥺💖

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫶 Support

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. many experienced and reponsive experts will be able look at the problem and quickly address it. please include a thorough description of the problem with code and data examples if at all possible. the more detail you give, the more we can help — no gatekeeping here 💅

🐛 Reporting Bugs

report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. bug reports can be submitted via the web:

http://redmine.open-bio.org/projects/bioperl/

bugs are not a vibe, but reporting them absolutely is 🌟

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👑 AUTHOR - Mark A. Jensen 👑

email maj -at- fortinbras -dot- us 💌

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🧚 APPENDIX 🧚

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ (sneaky little underscore besties, you know the ones 🙈)

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and that's the whole page, babes 🍓 — this was Bio::D...pecies(3pm) from perl v5.36.0, dated 2023-01-22. slay, stay hydrated, and may your taxonomies always resolve 🌸💖✨