Bio::D...nscript(3pm)

✨ NAME ✨

okay so bestie, this is Bio::DB::GFF::Aggregator::reftranscript — it aggregates references transcripts 💖

(the whole thing lives in the User Contributed Perl Documentation corner of the manual, so you already know it's a vibe.)

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🌸 SYNOPSIS 🌸

use Bio::DB::GFF::Aggregator;

that's it. that's the whole thing. no notes. 💅

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🦋 DESCRIPTION 🦋

okay so Bio::DB::GFF::Aggregator::retranscript was written to make the compound feature reftranscript, for use with Gbrowse editing software developed outside of the GMOD development group. (not me knowing the lore 😭)

It can be used to aggregate reftranscripts from refexons, loaded as second copy features. These features, in contrast to transcripts, are usually implemented as features which cannot be edited and serve as starting point references for annotations added using Gbrowse for feature visualization. ✨

Adding features to the compound feature reftranscript can be done by adding to the part_names call (i.e. refCDS). like, just toss it in there 🫶

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🎀 method 🎀

• Title — method
• Usage — $aggregator->method
• Function — return the method for the composite object
• Returns — the string reftranscript
• Args — none
• Status — Public

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🌈 part_names 🌈

• Title — part_names
• Usage — $aggregator->part_names
• Function — return the methods for the sub-parts
• Returns — the list refexon
• Args — none
• Status — Public

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💜 main_name 💜

• Title — main_name
• Usage — $aggregator->main_name
• Function — return the method for the main component
• Returns — the string reftranscript
• Args — none
• Status — Public

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💀 BUGS 💀

None reported. 😌✨ we love a clean record, no cap.

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🔥 SEE ALSO 🔥

• Bio::DB::GFF
• Bio::DB::GFF::Aggregator

go read those next bestie, iykyk 🦋

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👑 AUTHOR 👑

Paul Rudnick <rudnick@ncifcrf.gov>. 🫶

Copyright (c) 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

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and that's the whole page, periodt 💖 this was perl v5.40.0, dated 2024-10-20, straight out of the Bio::D...nscript(3pm) manual — slay, go aggregate some reftranscripts bestie 🌸✨