Bio::D...tch_gap(3pm)

🌸 Bio::DB::GFF::Aggregator::match_gap 💅

okay bestie, so this page is from the User Contributed Perl Documentation set, and it's all about Bio::DB::GFF::Aggregator::match_gap — the GFF3 match aggregator. pull up a chair, we're gonna get you fluent in it, no cap.

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✨ NAME ✨

Bio::DB::GFF::Aggregator::match_gap — the GFF3 match aggregator, periodt.

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🦋 SYNOPSIS 🦋

here's the whole vibe in one box, literally:

-------------------------------------------------
Aggregator method: match_gap
Main method:       match
Sub methods:       match
-------------------------------------------------

like… that's it. that's the whole energy. short, sweet, iconic. 👑

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💖 DESCRIPTION 💖

so this aggregator? it exists for GFF3 style gapped alignments — the kind where there's a single feature of method 'match' that's carrying around a 'Gap' attribute. one feature, one Gap, main character energy. 🌈

the 'Gap' attribute's format is a whole little series of (operation,length) pairs, and they get separated by space characters. so for example you'd see something like:

'M8 D3 M6'

(the GFF reference has the full explanation if you wanna go deeper — go off, honestly)

and here's the important part, so listen up: this module only recognizes the M and D operators. that's it. those two. and ngl, that should be totally sufficient for simple nucleotide to nucleotide alignments. if that's your situation, you're eating good. 🍓

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💀 BUGS 💀

None reported.

(yeah. nothing. clean sheet. we love that for us. 🎀)

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👑 SEE ALSO 👑

• Bio::DB::GFF
• Bio::DB::GFF::Aggregator

go read those if you wanna see the whole family, iykyk.

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🫶 AUTHOR 🫶

Dmitri Bichko

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

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and that's a wrap, bestie — this page came to you courtesy of perl v5.40.0 and the date 2024-10-20, so go forth and aggregate those gapped alignments responsibly. mwah 💅✨💜