Bio::D...Target(3pm)

✨ Bio::DB::Bam::Target πŸ’…

okay bestie, so this is the manual for Bio::DB::Bam::Target β€” the object that's the query portion of a BAM/SAM alignment, but like… in NATIVE alignment 🌈. That's the whole vibe of it. She's a little niche, she's a little iconic, and she knows exactly what orientation she's in. πŸ‘‘


🌸 NAME 🌸

Bio::DB::Bam::Target β€” the object that represents the query portion of a BAM/SAM alignment in NATIVE alignment. 🧬✨


πŸ¦‹ SYNOPSIS πŸ¦‹

Not me telling you this is literally identical to Bio::DB::Bam::Query except for one lil' thing, and that thing is the whole personality:

  • the dna,
  • the qscores,
  • and the start and end positions

are all given in the orientation in which the read was sequenced, not in the orientation in which it was aligned. πŸ˜€πŸ”

fr fr, that's it. That's the entire difference. Same object, same energy, different orientation. If you were expecting more, bestie, she's a minimalist. πŸŽ€

and that's the whole page, no notes πŸ’– no cap, that's perl v5.42.3, dated 2026-08-19, from the User Contributed Perl Documentation crew β€” love that for them 🫢 stay oriented βœ¨πŸ’œ

πŸ“¦ where this page comes from