Bio::C...unigene(3pm)

πŸ“¦
version 1.7.3 Β· 2 versions
  • 1.7.3 Β· debian bookworm, debian trixie, ubuntu noble, ubuntu resolute, ubuntu stonking (latest)
  • 1.7.3 Β· ubuntu jammy
, in debian bookworm, debian trixie, ubuntu noble, ubuntu resolute, ubuntu stonking

πŸ’– Bio::ClusterIO::unigene πŸ’–

okay bestie, welcome to the Bio::ClusterIO::unigene page β€” part of the User Contributed Perl Documentation, no cap. it's a whole UniGene input stream and we're gonna vibe through it together 🧬✨


✨ NAME ✨

Bio::ClusterIO::unigene β€” UniGene input stream, fr fr πŸ’…


🌸 SYNOPSIS 🌸

okay so, listen. do NOT use this module directly. like, not me catching you using it directly 😭. use it via the Bio::ClusterIO class instead. that's the way. periodt.


πŸ¦‹ DESCRIPTION πŸ¦‹

so this object reads from Unigene *.data files that you download from:

ftp://ftp.ncbi.nih.gov/repository/UniGene/

and here's the tea β€” it does not download the file for you, and it does not decompress it either. you have to do that yourself, bestie. this module is literally just the reading part. the fetching-and-unzipping is giving DIY energy πŸ™ˆ


🫢 FEEDBACK 🫢

πŸ’Œ Mailing Lists

user feedback is an integral part of the evolution of this and other Bioperl modules β€” like, genuinely, it's the whole glow-up process. send your comments and suggestions preferably to one of the Bioperl mailing lists. your participation is much appreciated πŸ’–

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

πŸŽ€ Support

please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly, okay? there are so many experienced and responsive experts who will be able to look at your problem and quickly address it. iconic behavior honestly. and please include a thorough description of the problem with code and data examples if at all possible β€” the more deets the better, iykyk πŸ‘‘

πŸ› Reporting Bugs

report bugs to the Bioperl bug tracking system so we can keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

do it. the maintainers will love you for it. slay πŸ¦‹


πŸ‘‘ AUTHORS - Andrew Macgregor πŸ‘‘

Email: andrew at cbbc.murdoch.edu.au


🌈 APPENDIX 🌈

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ β€” that's your lil hint that they're the backstage crew, not the main character πŸ’…

⭐ next_cluster

Title   : next_cluster
Usage   : $unigene = $stream->next_cluster()
Function: returns the next unigene in the stream
Returns : Bio::Cluster::UniGene object
Args    : NONE

so you call it, you get the next unigene in the stream, and it comes back as a Bio::Cluster::UniGene object. no args, no drama, just vibes ✨


and that's the whole page, bestie πŸŽ€ this one's from perl v5.34.0, dated 2022-03-27 β€” literally a little time capsule. mwah πŸ’‹ go read some unigenes πŸ§¬πŸ’–

πŸ“¦ where this page comes from