Bio::B...medxml(3pm)

📦 version 1.70, in debian trixie, ubuntu noble, ubuntu resolute, ubuntu stonking

💖 NAME 💖

okay so this is the Bio::B...medxml(3pm) manual page (yes the title got truncated, she's shy), and the actual star of the show is Bio::Biblio::IO::pubmedxml — a converter of XML files with PUBMED citations. that's it. that's her job. 💅

✨ VERSION ✨

version 1.70 — she's been around, she's grown, we love a glow-up 🦋

🌸 SYNOPSIS 🌸

bestie. listen. Do not use this object directly. it is recommended to access it and use it through the Bio::Biblio::IO module:
use Bio::Biblio::IO;
my $io = Bio::Biblio::IO->new(-format => 'pubmedxml');

like. she's not a solo artist, she's in a group. use the group. 🫶

🎀 DESCRIPTION 🎀

This object reads bibliographic citations in XML/MEDLINE format and converts them into Bio::Biblio::RefI objects. it is an implementation of methods defined in Bio::Biblio::IO. no cap, that's literally the whole personality. ✨

The main documentation details are to be found in Bio::Biblio::IO. (so go read that one too, she's not gatekeeping.) 📚

🔥 FUNCTIONS 🔥

handle_start

handle_end

(yes those are just the names, she's mysterious like that 🙈)

💀 INTERNAL METHODS 💀

_initialize

internal. meaning: not your business, bestie. hands off. 👑

💜 FEEDBACK 💜

📬 Mailing lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. (fr fr, they actually read it.) 💖

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫶 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

not me asking you to please include a thorough description with code and data examples. do it. it makes everybody's life better. 😭

🐛 Reporting bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://redmine.open-bio.org/projects/bioperl/

✍️ Authors

Martin Senger <senger@ebi.ac.uk>

This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license of the same terms as the perl 5 programming language system itself

and that's the whole vibe check, bestie 🌈 this page was served up by perl v5.36.0 on 2023-02-14, under User Contributed Perl Documentation 💖 slay, go read Bio::Biblio::IO now, periodt 🎀

📦 where this page comes from