Algori...Report(3pm)

✨ NAME ✨

Algorithm::HMM::Report — the report object for the Algorithm::HMM package, and honestly? she's the moment. 💖

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🌸 DESCRIPTION 🌸

okay so bestie, here's the tea 🍓: the Algorithm::HMM::Report object is literally what the Algorithm::HMM search method hands back to you. It's giving ✨receipts✨ — it holds the sets of global hits and domain hits that the model returned. That's it, that's the whole vibe. 👑

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🦋 SYNOPSIS 🦋

# Search the HMM model.  An Algorithm::HMM::Report object is returned.
my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE");

# Get all the global hits from the report object.
my @ghits = $rep->global_hits();

# Get all the domain hits from the report object.
my @dhits = $rep->domain_hits();

like, run the search, get a report, pull the hits out. no cap, it's that simple. 💅

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💜 METHODS 💜

my @ghits = $rep->global_hits();
my @dhits = $rep->domain_hits();

okay so both of these return lists, and the way that they do it is iconic:

• global_hits() gives you back a list of Algorithm::HMM::Hit::Global objects. A global hit = a match across the entire model. main character energy, full-length slay. 👑
• domain_hits() gives you back a list of Algorithm::HMM::Hit::Domain objects. A domain hit = a match on a smaller subsequence of the model. a lil cameo appearance, but she still ate. 🎀

so like: global = the whole model matched, domain = just a slice of the model matched. iykyk 🧚

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🌈 AUTHOR 🌈

The Algorithm::HMM package was originally written by Cory Spencer <cspencer@sfu.ca> of the Simon Fraser University Brinkman Laboratory. 🏫✨

It is currently maintained by Matthew Laird <matt@brinkman.mbb.sfu.ca>. 🫶

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⭐ SEE ALSO ⭐

• Algorithm::HMM
• Algorithm::HMM::Hit::Global
• Algorithm::HMM::Hit::Domain

go read those next bestie, they're all connected, it's a whole cinematic universe 🍿

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perl v5.34.0 · 2022-02-06 — that's the version and date this lil page shipped with, mwah 💋 thanks for reading, go slay some HMM searches 🦋💖👑