BP_SPLIT_SEQ(1p)

💖 BP_SPLIT_SEQ 💖

okay bestie, so this is bp_split_seq, a lil user-contributed Perl script situation (it lives in the section 1p, iykyk — that's "User Contributed Perl Documentation"). And what does it do? It takes your sequence and goes chop chop chop into equal sized chunks, with an optional overlapping range if you're feeling spicy. 🦋

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✨ NAME ✨

bp_split_seq — splits a sequence into equal sized chunks with an optional overlapping range.

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🌸 SYNOPSIS 🌸

bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

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🎀 DESCRIPTION 🎀

The script will split sequences into chunks. that's it, that's the whole vibe 💅

Mandatory Options:

• -c — the desired length of the resulting sequences. like, how big do you want each chunk to be, bestie.
• -f — the input file. it must be in FASTA format, no exceptions, fr fr.

Special Options:

• -o — the overlapping range between the resulting sequences.
• -i — create an index file with the resulting sequence files. this one is lowkey iconic because it's useful if you want to pass this list as input arguments into another programs (i.e. CLUSTAL, HMMER, etc.). the way that it just hands you a list?? ate. 👑

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💬 FEEDBACK 💬

🌈 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. so send your comments and suggestions, preferably to the Bioperl mailing list. your participation is much appreciated, no cap 🫶

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system so they can keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

ngl bestie, if you find a bug, please actually report it?? we're all just out here trying to keep track of things 😭

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👑 AUTHORS 👑

Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at intelligenomes.comE<gt>
(some enhancements)

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and that's the whole page, bestie!! this one's from perl v5.32.1, dated 2021-08-15 — yeah she's a lil vintage but she still slays ✨💜