BP_SEQRETSPLIT(1p)

📦
version 1.7.8 · 3 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 BP_SEQRETSPLIT 💖

okay bestie, so this is bp_seqretsplit from the 1p manual section (the "p" is for perl, iykyk) — a little script that does ONE thing and does it slay 💅

✨ NAME ✨

bp_seqretsplit — split a sequence (or stream) into a single file per sequence 🦋

🌸 SYNOPSIS 🌸

bp_seqretsplit file1 file2 ..
# or
bp_seqretsplit < file1

like. that's it. that's the whole vibe check 🎀

🧚 DESCRIPTION 🧚

okay so here's the tea, bestie: this script takes all the sequences from your fasta file(s) (or from stdin if you're piping, which, iconic) and splits them into individual files. one sequence, one file, main character energy for every single one of them ✨

the filename is literally the sequence ID — which is everything before the 1st whitespace in a FASTA header. yes, everything before that first whitespace. that's the rule. periodt.

🚨 okay so important warning time: right now it does NOT check whether it's about to overwrite an existing file. so your IDs better be unique, or you're gonna lose data and we're gonna cry 😭 IDs should be unique. fr fr.

and for the history girlies: this whole thing was inspired by the EMBOSS seqretsplit tool 👑

💌 FEEDBACK 💌

📬 Mailing Lists

user feedback is an integral part of the evolution of this module and all the other Bioperl modules. so send your comments and suggestions (preferably, like, to the Bioperl mailing list) and your participation is much appreciated 🫶

bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

found a bug? report it to the Bioperl bug tracking system so they can keep track of all the bugs and their resolution — it's giving community service, and we love that for you 💜 bug reports can be submitted via email or the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR 👑

Jason Stajich <jason_AT_bioperl_DOT_org> — the legend themselves 🌟

and that's a wrap, bestie 🎀 this page came to you from perl v5.32.1, dated 2021-08-15 — go split some sequences, stay hydrated, and don't overwrite your files 💖✨🦋

📦 where this page comes from